FCSalyzer Flow Cytometry Data Analysis

FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics.


  • Analyses FCS2.0 list mode files and FCS3 files
  • What you see is what you get - plots are placed onto a paginated doument
  • Dot plots, density plots and histograms - all with overlays
  • Plots can be duplicated with their statistics