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FCSalyzer - free program for analysing flow cytometry data

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FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems.

FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics.

Sven Mostböck, Malergasse 7, 93047 Regensburg


  • Analyses FCS2.0 list mode files
  • What you see is what you get - plots are placed onto a paginated doument
  • Dot plots, density plots and histograms - all with overlays
  • Plots can be duplicated with their statistics